Master of Science
MSOverview
The Master of Science (MS) in Physician Assistant Studies, or MSPA, program is a 9-quarter program (with one summer break) that includes streamlined courses with innovative content delivery, a state-of-the-art simulation lab, and world-class clinical anatomy experiences as well as early exposure to patient care.
Students receive mentorship and support in their academic and research focus areas by clinically practicing Stanford PAs. During the didactic work, PA students are located at the School of Medicine and enroll as a cohort in a clinically focused curriculum. They take several courses along with medical students, allowing for inter-professional education. During their clerkship year, students rotate through Stanford-affiliated hospitals and ambulatory practices as well as select sites throughout California.
In an innovative approach to PA education that encourages the next generation of PA leaders, students are required to select one leadership track and complete a thesis project in that area. The leadership tracks include:
Community Health
Health Services and Policy Research
Clinical Research
Medical Education
Healthcare Administration
Upon completion of this program, students are prepared to sit for the Physician Assistant National Certification Examination (PANCE).
Courses offered by the Master of Science in Physician Assistant Studies program are listed under the subject code PAS on the Stanford Navigate Enrollment website.
Requirements
Program Requirements
Core Curriculum
Students receive formal classroom education in basic sciences, core medical knowledge, acquisition of skills for clinical practice, professionalism, and multiculturalism. The didactic curriculum prepares students for clinical clerkships.
Foundations of Clinical Medicine - 4 Units
PAS 201
Foundations of Clinical Medicine
Foundations of Clinical Pharmacology - 1 Unit
PAS 203
Foundations of Clinical Pharmacology
Clinical Anatomy (Macroscopic, Microscopic, Developmental, Imaging) - 13 Units
SURG 203
Clinical Anatomy (Macroscopic, Microscopic, Developmental, Imaging)
Pathophysiology and Clinical Medicine Series (I-IV)
42 Units Total for the Series
Pathophysiology and Clinical Medicine is a four-course series presenting organ-system based physiology, pathology and pathophysiology. Each organ-specific block includes a review of the anatomy and related histology, normal function of that organ system, how the organ system is affected by and responds to disease, and how diseases of that organ system are treated. Enrollment is limited to Master of Science in Physician Assistant Studies students.
Note: Beginning in AY 26-27, this course series is being renamed/renumbered from Principles of Clinical Medicine (PAS 212-215) to Pathophysiology and Clinical Medicine (PAS 232-235). This change has taken effect for the first two courses in the series; the latter two courses will be changed prior to AY 27-28.
Practice of Medicine Series (I-V)
33 Units Total for the Series
MSPA students take five quarters of the Practice of Medicine course series, which includes:
Core skills training in interviewing and physical examination
Information literacy
Nutrition principles
Clinical epidemiology and biostatistics
Evidence-based practice
Psychiatry
Biomedical ethics
Health policy
Population health
Working as part of an interprofessional healthcare team
Advanced clinical skills
Clinical Pharmacology and Therapeutics Series (I-IV)
9 Units Total for the Series
Clinical Pharmacology and Therapeutics is a four-course series that covers general pharmacokinetic principles and the pharmaceutical therapies related to subjects covered in the Pathophysiology and Clinical Medicine course series. Enrollment is limited to Master of Science in Physician Assistant Studies students.
Note: Beginning in AY 26-27, this course series is being renamed/renumbered from Clinical Therapeutics (PAS 222-225) to Clinical Pharmacology and Therapeutics (PAS 242-245). This change has taken effect for the first two courses in the series; the latter two courses will be changed prior to AY 27-28.
LEAD-PA (Leadership, Excellence, ADvocacy, and Professionalism in Action) Series (I-IV)
8 Units Total for the Series
LEAD-PA is a four-part course series that spans both the didactic and clinical years. The course series covers:
PA profession history
Laws and regulations affecting PAs
PA certification and licensure
Leadership skills
Quality improvement
Professionalism and scope of practice
Risk management
Reimbursement, documentation, coding, and billing
Culturally competent health care
Health literacy
Health disparities
Telemedicine
Advanced clinical skill training
Leadership skill training
Enrollment is limited to Master of Science in Physician Assistant Studies students.
Note: Beginning in AY 26-27, this course series is being renamed from PAs in Health Care to LEAD-PA (Leadership, Excellence, ADvocacy, and Professionalism in Action). This change has taken effect for the first course in the series; the latter three courses will be changed prior to AY 27-28.
Clerkships
Each Clerkship course is worth 6 units, for a total of 72 Units.
The clinical phase of the program is 12 months long and exposes students to medical care across the lifespan, including infants, children, adolescents, adults, and the elderly. They will be exposed to women’s health, including prenatal and gynecologic care; care of conditions requiring surgical management, including pre-operative, intra-operative, and post-operative; and behavioral and mental health conditions. Supervised clinical care experiences will occur in the outpatient and inpatient settings, the emergency department, and the operating room. Enrollment is limited to Master of Science in Physician Assistant Studies students.
The majority of rotations are expected to take place within the Stanford Medicine community, as well as other select sites in California. Current clerkship experiences include the following:
PAS 301
Internal Medicine Clerkship I
PAS 302
Internal Medicine Clerkship II
PAS 303
Family Medicine/ Primary Care Medicine I
PAS 304
Family Medicine/ Primary Care Medicine II
PAS 311
Pediatrics
PAS 320
Surgery
PAS 321
Emergency Medicine
PAS 331
Women's Health including Prenatal and Gynecologic Care
PAS 336
Behavioral Medicine/ Mental Health
PAS 351
MSPA Elective I
PAS 352
MSPA Elective II
PAS 353
MSPA Elective III
Clinical sites and preceptors for core and elective clerkships will be provided by the program. Students are not required to solicit clinical sites or preceptors. Students may not suggest sites or preceptors for core clerkships. Students may suggest sites or preceptors for elective rotations, but are not required to do so. Student-suggested elective sites and preceptors will be reviewed and evaluated by the Program for educational suitability, but placement is not guaranteed. Housing and transportation stipends are not provided for elective rotations.
Leadership Tracks and Thesis Project
The Master of Science Degree in Physician Assistant Studies Program desires to develop exceptional clinical PAs and future PA leaders. Beyond the core curriculum and clerkships, students are required to select a leadership track and complete a thesis. The leadership tracks are intended to foster leadership potential in each student in one of five domains. The leadership tracks include Community Health, Health Services and Policy Research, Clinical Research, Medical Education, and Healthcare Administration.
During the first quarter, students are encouraged to explore and compare the different Leadership Track areas and their course and research opportunities. Each student must declare a Leadership Track by submitting their course plan, learning objectives, and general project description to the Director of Student Scholarship and their respective Leadership Track lead by the end of the first quarter.
Students are also required to submit a written report of their scholarly work and present their project at the Thesis Symposium held in the last Winter Quarter. A final complete Thesis paper is due at the end of Q8 (December).
Clinical Research
Undertaking the Clinical Research Leadership Track will, among other objectives, enable students to critically evaluate medical literature, underscoring the limitations of much of the current practice of medicine. Our belief is that the ability to critically review the burgeoning body of medical publications paves the way for a lifetime of learning that is essential to the prudent, conscientious, cost-effective practice of scholarly medicine. In addition to didactic instruction, students will participate in the conduct of faculty-mentored, hypothesis-driven clinical research projects for their thesis.
Community Health
Health and disease are shaped by our social and physical environments. Our goal is to empower future PAs to improve the health of diverse communities and reduce health inequity through scholarship and community engagement. The Community Health leadership track provides MSPA students with a faculty-mentored scholarly experience in areas of individual interest combined with structured coursework to support this scholarship. Students in the Community Health Concentration may also have an opportunity to partner with the AHEC Community Scholars Program ,where they will receive community-oriented academic training and complete a project in collaboration with an affiliated community clinic.
Health Services and Policy Research
Healthcare quality, cost, and access are significantly affected by government policies and by a wide range of institutions, including hospitals, physician groups, pharmaceutical companies, and health insurers. To formulate effective health policy and improve clinical practice, it is essential to understand the interactions among these institutions, medical decision-making at the population level, and the social and economic environment of healthcare. The Health Services and Policy Research leadership track provides students with a faculty-mentored scholarly experience in areas of individual interest combined with structured coursework to support this scholarship.
Medical Education
The purpose of the Leadership Track in Medical Education is to prepare students for engagement and leadership in the field of medical education. Students will choose a specific area of interest in curriculum development and delivery, evaluation and assessment, educational technology, or simulation, and complete a comprehensive education project with the guidance of a faculty mentor combined with structured supportive coursework. Students in the Medical Education leadership track may have an opportunity to complete the Honors Certificate Program through the Clinical Teaching Seminar Series of courses.
Health Administration
The Leadership Track in Healthcare Administration is designed to give students an overview of key topics in healthcare administration, economics, and workforce issues for advanced practice providers. Through a faculty-mentored scholarly experience, students will engage in research related to healthcare economics, healthcare administration, advanced practice provider utilization, scope of practice, professional advocacy, and leadership training and development.
Milestone Examinations
All MSPA students are required to complete and pass the following milestone examinations:
End of Didactic Exam (EOD)
The End of Didactic Exam (EOD) is a 120-question exam covering all topics from the Principles of Clinical Medicine and the Clinical Therapeutics course series. Students must successfully complete End of Didactic exam prior to beginning clerkships.
Clinical Performance Examination for MSPA Students (CPX-P)
The CPX-P is a comprehensive examination consisting of both standardized patient encounters and computer-based exercises. The goals of this assessment are to evaluate students’ history and physical examination skills, patient interaction skills, clinical reasoning, and overall medical knowledge.
During the CPX-P, students see a series of patients with a broad range of clinical problems. Students are expected to perform a focused history and physical examination, and are also expected to communicate their thinking and preliminary plans to the patients. Students also complete computer-based exercises designed to assess medical knowledge and clinical reasoning.
Students must demonstrate at least minimum competency in each of three primary skill areas:
History and physical examination
Communication skills
Clinical reasoning
Applied Procedural Skills Assessment (APSA)/Professionalism and Interpersonal Skills Measurement (PRISM)
The APSA/PRISM is a two-part assessment requiring students to demonstrate technical skills (APSA) and professionalism and interpersonal skills (PRISM).
APSA requires students to demonstrate at least minimum competency in each of the following skill areas:
Sterile technique
Local anesthesia administration (subcutaneous route)
Suturing
Intramuscular injection
Billing and coding the patient encounter
PRISM requires students to demonstrate at least minimum competency in professionalism and interpersonal skills, including, integrity, respect, and advocacy during a challenging encounter with a colleague in a simulated clinical environment.
Students must pass both parts of the APSA/PRISM assessment to successfully complete the milestone.
End of Curriculum Exam (EOC)
The Physician Assistant Education Association (PAEA) EOC exam is used by the MSPA program as the summative assessment for medical knowledge. The 300-question exam is built using a blueprint and content area list developed by PA educators and national exam experts and is administered at the end of the clerkship year.
MSPA Program Annual Survey
It is a milestone requirement for MSPA students to complete the MSPA Program Annual Survey for accreditation compliance and to provide feedback for program improvement.

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